Search
Reset Examples

The search field accepts scientific plant names, i. e. names of genera or Brassicaceae tribes.

Examples:

  • Camelineae — will find information about all member genera of tribe Camelineae.
  • Arabidopsis — will find information about the genus Arabidopsis.

After having typed 3 characters, you'll be provided with suggestions from the database.

Links
  • Phylogenetics references
  • Privacy policy in respect to your sequence data

    We store the sequence data you submit for analysis on our system and any analysis results are also stored temporarily. This is quite obviously technically necessary to provide the service available on this page.

    Sequence data can not be connected to any personal data of yours other than the technically necessary session cookie stored on your computer (see Privacy policy at the end of this page).

    Your sequence data and analysis results are stored for a maximum of one day. After this period of time they are automatically deleted. By using this service you implicitely accept these terms.

Export options

Export tribe tree in format...

Newick
ASCII
SVG
as
Browser view
Download
Scalable Vector Graphics: a graphics format suitable for import into many graphics programs e. g. Adobe, Corel, Inkscape...
"Comma-separated values": a data format suitable for import into most spreadsheet and database programs. The column separator used here is the semicolon. Character coding is UTF-8.
A format commonly used in phylogenetics to represent a tree structure as nested brackets.
"American standard code for information interchange": the name can be used almost synonymously with "plain text", also including a very limited graphics capability.
A format commonly used to store alignments along with meta-information, e. g. analysis parameters. Used e. g. by PAUP* and MrBayes.
Probably due to its simplicity the most frequently used sequence or alignment format ever designed. Used by a vast majority of bioinformatics programs and packages.
Widely used alignment format. Required as input by many bioinformatics programs. The interleaved version is exported here. Unfortunately very limited meta-information capabilities.
The alignment format originally used by the GCG Wisconsin bioinformatics package (e. g. Pileup). Still widely used as an alignment format.
The format used by Clustal (and some other programs) to store alignments.
Downloads

Species Checklist v1.3

Reference tree for tribe Microlepidieae

SVG Tree

Cuphonotus humistratus0.04745893461500778898Menkea sphaerocarpa0.035862071616881603660.14778779137339800864Pachycladon novae-zelandiae0.00000179217096895304Pachycladon radicata0.00916633081828594973Irenepharsus magicus0.00000179217096895304Drabastrum alpestre0.01496703844155220474Pachymitus cardaminoides0.00647692661582669263Geococcus pusillus0.025649845884191481430.031146479311941165090.08505388534135054079Carinavalva glauca0.04325645168470223373Stenopetalum decipiens0.081673066714384109920.01103358612434486227Microlepidium pilosulum0.12473184795935085556Blennodia pterosperma0.03521715411301400839Blennodia canescens0.058515814066778408520.03146237530106790053Scambopus curvipes0.063753272424989793080.059536402845553344780.006001498653069302710.01810054355843866009Phlegmatospermum eremaeum0.096742181069052940460.01204081181389678352Harmsiodoxa blennodioides0.079616080329879684860.000001792170968953040.005356234324400987490.021097824492960420150.00311139604753983339Pachycladon wallii0.00706673798593689031Arabidella trisecta0.087473860499418493180.00190599741582957714Pachycladon cheesemanii0.00000179217096895304Pachycladon exilis0.005792308341010673180.016159867618137462720.00000179217096895304Pachycladon stellata0.00907347527254559992Pachycladon fastigiata0.00298540849047007530Pachycladon enysii0.00297383845680936542Pachycladon latisiliqua0.021211386183948161000.000001792170968953040.000001792170968953040.003001984340646537960.000001792170968953040.005996417299206155930.010023528929084191820.000.050.10.150.2substitutions/site

ASCII tree

                                                           /-----------------+ Cuphonotus humistratus
 /---------------------------------------------------------+
 |                                                         \------------+ Menkea sphaerocarpa
 |
 |   / Pachycladon novae-zelandiae
 |   |
 |   |  /---+ Pachycladon radicata
 |   |  |
=/   |  |        / Irenepharsus magicus
 |   |  |        |
 |   | /+        |                                  /-----+ Drabastrum alpestre
 |   | ||        |                                  |
 |   | ||        | /--------------------------------+           /-+ Pachymitus cardaminoides
 |   | ||        | |                                \-----------+
 \---+ |\--------+ |                                            \---------+ Geococcus pusillus
     | |         | |
     | |         | |               /----------------+ Carinavalva glauca
     | |         | |          /----+
     | |         | |          |    \-------------------------------+ Stenopetalum decipiens
     | |         \-+          |
     | |           |   /------+  /-----------------------------------------------+ Microlepidium pilosulum
     | |           |   |      |  |
     | |           |   |      \--+                                  /-------------+ Blennodia pterosperma
     | |           |   |         |                      /-----------+
     \-+           /---+         \----------------------+           \----------------------+ Blennodia canescens
       |           |   |                                |
       |           |   |                                \------------------------+ Scambopus curvipes
       |           \   |
       |           |   \-------------------------------------+ Phlegmatospermum eremaeum
       |           |
       |           \------------------------------+ Harmsiodoxa blennodioides
       |
       |/--+ Pachycladon wallii
       /+
       |\---------------------------------+ Arabidella trisecta
       /
       |      / Pachycladon cheesemanii
       \------+
       \      \-+ Pachycladon exilis
       |
       |/---+ Pachycladon stellata
       ||
       \/-+ Pachycladon fastigiata
        |
        /-+ Pachycladon enysii
        \
        \--------+ Pachycladon latisiliqua

 |------------------|-------------------|------------------|-------------------|------------
 0               0.05                 0.1               0.15                 0.2
 substitutions/site

Bootstrapped tree

Cuphonotus humistratus0.04745893461500778898Menkea sphaerocarpa0.035862071616881603661000.14778779137339800864Pachycladon novae-zelandiae0.00000179217096895304Pachycladon radicata0.00916633081828594973Irenepharsus magicus0.00000179217096895304Drabastrum alpestre0.01496703844155220474Pachymitus cardaminoides0.00647692661582669263Geococcus pusillus0.025649845884191481431000.031146479311941165091000.08505388534135054079Carinavalva glauca0.04325645168470223373Stenopetalum decipiens0.08167306671438410992570.01103358612434486227Microlepidium pilosulum0.12473184795935085556Blennodia pterosperma0.03521715411301400839Blennodia canescens0.05851581406677840852910.03146237530106790053Scambopus curvipes0.06375327242498979308990.05953640284555334478240.00600149865306930271300.01810054355843866009Phlegmatospermum eremaeum0.09674218106905294046210.01204081181389678352Harmsiodoxa blennodioides0.0796160803298796848680.00000179217096895304290.00535623432440098749530.02109782449296042015310.00311139604753983339Pachycladon wallii0.00706673798593689031Arabidella trisecta0.08747386049941849318180.00190599741582957714Pachycladon cheesemanii0.00000179217096895304Pachycladon exilis0.00579230834101067318990.0161598676181374627270.00000179217096895304Pachycladon stellata0.00907347527254559992Pachycladon fastigiata0.00298540849047007530Pachycladon enysii0.00297383845680936542Pachycladon latisiliqua0.02121138618394816100200.00000179217096895304130.00000179217096895304530.0030019843406465379660.00000179217096895304170.00599641729920615593190.01002352892908419182940.23387735738227921622Out brassica-napus0.217865289018640884140.30872839167874516209Out aethionema-grandiflorum0.3087283916787451620900.250.50.75substitutions/site

Family-wide context

AethionemeaeCardamineaeLepidieaeSmelowskieaeAlyssopsideaeBoechereaeCamelineaeCrucihimalayeaeDescurainieaeErysimeaeHalimolobeaeMalcolmieaeCuphonotus humistratusMenkea sphaerocarpaPachycladon novae-zelandiaePachycladon radicataIrenepharsus magicusDrabastrum alpestrePachymitus cardaminoidesGeococcus pusillusCarinavalva glaucaStenopetalum decipiensMicrolepidium pilosulumBlennodia pterospermaBlennodia canescensScambopus curvipesPhlegmatospermum eremaeumHarmsiodoxa blennodioidesPachycladon walliiArabidella trisectaPachycladon cheesemaniiPachycladon exilisPachycladon stellataPachycladon fastigiataPachycladon enysiiPachycladon latisiliquaMicrolepidieaeOreophytoneaePhysarieaeTurritideaeYinshanieaeLineage IAlysseaeAnastaticeaeAphragmeaeArabideaeAsteaeBiscutelleaeCalepineaeCochlearieaeColuteocarpeaeConringieaeCremolobeaeEudemeaeHeliophileaeHillielleaeIberideaeKernereaeMegacarpaeeaeNotothlaspideaeSchizopetaleaeScoliaxoneaeStevenieaeBrassiceaeIsatideaeSisymbrieaeThelypodieaeLineage IIEutremeaeThlaspideaeExpanded lineage IIAnchonieaeBuniadeaeEuclidieaeHesperideaeChorisporeaeDontostemoneaeShehbazieaeLineage III

/var/www/brassibase/ / https://brassibase.cos.uni-heidelberg.de DE N