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"Comma-separated values": a data format suitable for import into most spreadsheet and database programs. The column separator used here is the semicolon. Character coding is UTF-8.
A format commonly used in phylogenetics to represent a tree structure as nested brackets.
"American standard code for information interchange": the name can be used almost synonymously with "plain text", also including a very limited graphics capability.
A format commonly used to store alignments along with meta-information, e. g. analysis parameters. Used e. g. by PAUP* and MrBayes.
Probably due to its simplicity the most frequently used sequence or alignment format ever designed. Used by a vast majority of bioinformatics programs and packages.
Widely used alignment format. Required as input by many bioinformatics programs. The interleaved version is exported here. Unfortunately very limited meta-information capabilities.
The alignment format originally used by the GCG Wisconsin bioinformatics package (e. g. Pileup). Still widely used as an alignment format.
The format used by Clustal (and some other programs) to store alignments.
Downloads

Species Checklist v1.3

Reference tree for tribe Thlaspideae

SVG Tree

Graellsia saxifragifolia0.03105933130004393319Peltaria turkmena0.03131641165237533664Peltaria alliacea0.033366189074046578860.02281902677590025297Peltariopsis planisiliqua0.08816151427879881375Thlaspi ceratocarpum0.00652209027258295135Thlaspi arvense0.007212279994492475610.036642256807486839330.014497953536613631190.00607899949929944540Thlaspi alliaceum0.04428299032528780488Pseudocamelina campylopoda0.04012496479727205301Pseudocamelina glaucophylla0.005163384621083584760.02752991383841433756Didymophysa fedtschenkoana0.02274825221448573825Elburzia fenestrata0.01724490449100787512Didymophysa aucheri0.006726221232298939740.001105691202931844080.027430409955911453510.003025483238088936410.001782291935548956310.005638775752808237140.00000125172896635084Pachyphragma macrophyllum0.04188104847242039158Pseudovesicaria digitata0.017734120331409013870.01292922336826489785Sobolewskia caucasica0.01811596431865460446Parlatoria rostrata0.022212002891503292850.006983327161006518990.00000125172896635084Alliaria petiolata0.025259389869812798320.005151988030946133380.000.0250.050.0750.1substitutions/site

ASCII tree

 /-----------------------+ Graellsia saxifragifolia
 |
 |                          /------------------------+ Peltaria turkmena
 |        /-----------------+
 |        |                 \-------------------------+ Peltaria alliacea
 /   /----+
 |   |    |           /--------------------------------------------------------------------+ Peltariopsis planisiliqua
 |   |    |           |
 |   |    \-----------+                           /-----+ Thlaspi ceratocarpum
 |   |                \---------------------------+
 \---+                                            \-----+ Thlaspi arvense
 |   |
 |   | /----------------------------------+ Thlaspi alliaceum
 |   | |
 |   | |                       /------------------------------+ Pseudocamelina campylopoda
 |   \-+ /---------------------+
 |     | |                     \---+ Pseudocamelina glaucophylla
=/     \-+
 |       |                     /-----------------+ Didymophysa fedtschenkoana
 |       |                     |
 |       \---------------------+/------------+ Elburzia fenestrata
 |                             \+
 |                              \----+ Didymophysa aucheri
 |
 |             /--------------------------------+ Pachyphragma macrophyllum
 |   /---------+
 |   |         \-------------+ Pseudovesicaria digitata
 |   /
 |   |     /-------------+ Sobolewskia caucasica
 |   \-----+
 \---+     \----------------+ Parlatoria rostrata
     |
     \-------------------+ Alliaria petiolata

 |-------------------|------------------|-------------------|-------------------|-----------
 0               0.025               0.05               0.075                 0.1
 substitutions/site

Bootstrapped tree

Out clausia-aprica0.07986649375780636995Graellsia saxifragifolia0.03105933130004393319Peltaria turkmena0.03131641165237533664Peltaria alliacea0.03336618907404657886930.02281902677590025297Peltariopsis planisiliqua0.08816151427879881375Thlaspi ceratocarpum0.00652209027258295135Thlaspi arvense0.007212279994492475611000.03664225680748683933520.01449795353661363119250.00607899949929944540Thlaspi alliaceum0.04428299032528780488Pseudocamelina campylopoda0.04012496479727205301Pseudocamelina glaucophylla0.005163384621083584761000.02752991383841433756Didymophysa fedtschenkoana0.02274825221448573825Elburzia fenestrata0.01724490449100787512Didymophysa aucheri0.00672622123229893974910.001105691202931844081000.02743040995591145351300.00302548323808893641140.00178229193554895631580.00563877575280823714440.00000125172896635084Pachyphragma macrophyllum0.04188104847242039158Pseudovesicaria digitata0.01773412033140901387950.01292922336826489785Sobolewskia caucasica0.01811596431865460446Parlatoria rostrata0.02221200289150329285470.00698332716100651899210.00000125172896635084Alliaria petiolata0.02525938986981279832380.00515198803094613338750.037656657963743130070.04901270384736822194Out arabidopsis-thaliana0.0490127038473682219400.050.10.150.2substitutions/site

Family-wide context

AethionemeaeCardamineaeLepidieaeSmelowskieaeAlyssopsideaeBoechereaeCamelineaeCrucihimalayeaeDescurainieaeErysimeaeHalimolobeaeMalcolmieaeMicrolepidieaeOreophytoneaePhysarieaeTurritideaeYinshanieaeLineage IAlysseaeAnastaticeaeAphragmeaeArabideaeAsteaeBiscutelleaeCalepineaeCochlearieaeColuteocarpeaeConringieaeCremolobeaeEudemeaeHeliophileaeHillielleaeIberideaeKernereaeMegacarpaeeaeNotothlaspideaeSchizopetaleaeScoliaxoneaeStevenieaeBrassiceaeIsatideaeSisymbrieaeThelypodieaeLineage IIEutremeaeGraellsia saxifragifoliaPeltaria turkmenaPeltaria alliaceaPeltariopsis planisiliquaThlaspi ceratocarpumThlaspi arvenseThlaspi alliaceumPseudocamelina campylopodaPseudocamelina glaucophyllaDidymophysa fedtschenkoanaElburzia fenestrataDidymophysa aucheriPachyphragma macrophyllumPseudovesicaria digitataSobolewskia caucasicaParlatoria rostrataAlliaria petiolataThlaspideaeExpanded lineage IIAnchonieaeBuniadeaeEuclidieaeHesperideaeChorisporeaeDontostemoneaeShehbazieaeLineage III

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